PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g05210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 333aa    MW: 37247.1 Da    PI: 8.2188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g05210genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.5e-09193240455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  CA02g05210 193 SHSLAERARREKISKKMKYLQDLVPGC----NKVTGKAGMLDEIINYVQSLQ 240
                 8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.14E-8187244No hitNo description
SuperFamilySSF474596.8E-17187258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-18189258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.11189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-7193240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-9195245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009299Biological ProcessmRNA transcription
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MLRCGEMSVL ERQRIVLERL YNHSKQQLSS LPQQDLAHFN NLIPGHMMSG GCVEENFTNF  60
DMFGGREHKG FAGSNFVTNN NCQEMAHPSF STVSNSSITT VSPPPEKENY PSTVVTPREN  120
VVSTKKRKAE FYVEEDCITK RPEGKTGEVH SEITEKSQRG VTGNDSKENS KTSEVQKPDY  180
IHVRARRGQA TDSHSLAERA RREKISKKMK YLQDLVPGCN KVTGKAGMLD EIINYVQSLQ  240
KQVEFLSMKL ATLNPRLDLI TDNFFTKNFP SYIATTFPPT VALPTLSEYN MIQHQQGSSG  300
DVAQMLPQRR DLMSFPEAFL GSSPLTVISS SI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00106PBMTransfer from AT2G18300Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-126HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561840.10.0PREDICTED: transcription factor HBI1
SwissprotQ9ZPW34e-56HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A0V0HU251e-177A0A0V0HU25_SOLCH; Putative transcription factor bHLH64-like
STRINGPGSC0003DMT4000400211e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40002142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.24e-56bHLH family protein